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Any custom branch can be deleted. Your Main and Live branches cannot be deleted. It can be helpful to delete custom branches if you've completed the work you were doing in a particular branch and have already merged those changes up the tree.
For instance, in a branch, you may have been working on an update to the styles of a button. But, once the update has been merged with Main and even deployed to Live, you don't need that branch anymore. To clean up the tree, you can delete this branch by going to the drop down menu in the top right of the Version Control side panel and selecting "Delete". As an extra precaution, Bubble gives you a chance to confirm that you do in fact wish to delete this branch.
Once you confirm, just like that, your branch tree is a bit cleaner and the number of custom branches you can create even increases back by one, so you can always create new branches to keep iterating on that button as needed!
In general, it's good to remember that these custom branches are typically meant for a single purpose. Once that one-time effort is complete, deleting the branch can help you keep your tree clean and organized.